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The first Europeans known to reach the South Island were the crew of Dutch explorer Abel Tasman who arrived in his ships Heemskerck and Zeehaen. In December 1642, Tasman anchored at the northern end of the island in Golden Bay which he named Moordenaar's Bay (Murderers Bay) before sailing northward to Tonga following a clash with Māori. Tasman sketched sections of the two main islands' west coasts. Tasman called them Staten Landt, after the States General of the Netherlands, and that name appeared on his first maps of the country. Dutch cartographers changed the name to Nova Zeelandia in Latin, from Nieuw Zeeland, after the Dutch province of Zeeland. It was subsequently Anglicised as New Zealand by British naval captain James Cook of HM Bark Endeavour who visited the islands more than 100 years after Tasman during (1769–1770).

The first European settlement in the South Island was founded at Bluff in 1823 by James Spencer, a veteran of the Battle of Waterloo.

In January 1827, the French explorer Jules Dumont d'Urville arrived in Tasman Bay on the corvette Astrolabe. A number of landmarks around Tasman Bay were named by d'Urville and his crew including d'Urville Island, French Pass and Torrent Bay.

When Britain annexed New Zealand in 1840, the South Island briefly became a part of New South Wales. This annexation was in response to France’s attempts to colonise the South Island at Akaroa[12] and the New Zealand Company attempts to establish a separate colony in Wellington, and so Lieutenant-Governor William Hobson declared British sovereignty over all of New Zealand on 21 May 1840 (the North Island by treaty and the South by discovery).

On 17 June 1843, Māori natives and the British settlers clashed at Wairau in what became known as the Wairau Affray. Also known as the Wairau Massacre in most older texts, it was the first serious clash of arms between the two parties after the signing of the Treaty of Waitangi and the only one to take place in the South Island. Four Māori died and three were wounded in the incident, while among the Europeans the toll was 22 dead and five wounded. Twelve of the Europeans were shot dead or clubbed to death after surrendering to Māori who were pursuing them.

The Otago Settlement, sponsored by the Free Church of Scotland, took concrete form in Otago in March 1848 with the arrival of the first two immigrant ships from Greenock (on the Firth of Clyde) — the John Wickliffe and the Philip Laing. Captain William Cargill, a veteran of the Peninsular War, served as the colony's first leader: Otago citizens subsequently elected him to the office of Superintendent of the Province of Otago.

While the North Island was convulsed by the Land Wars of the 1860s and 1870s, the South Island, with its low Māori population, was generally peaceful. In 1861 gold was discovered at Gabriel's Gully in Central Otago, sparking a gold rush. Dunedin became the wealthiest city in the country and many in the South Island resented financing the North Island’s wars. In 1865 Parliament voted on a Bill to make the South Island independent: it was defeated 17 to 31.

In the 1860s, several thousand Chinese men, mostly from the Guangdong province, migrated to New Zealand to work on the South Island goldfields. Although the first Chinese migrants had been invited by the Otago Provincial government they quickly became the target of hostility from white settlers and laws were enacted specifically to discourage them from coming to New Zealand.